No Tim it won't. There is only one was to get rid of them and that is a new windshield.
The pits are caused by sand and dirt particles hitting the glass as you go down the road, you would have to grind down the surface of the glass to get rid of them. Unfortunatly this would distort the glass far too much to drive with.
When and if you do get a new windshield make sure you watch them do the job. Don't let them use a chinese windshield (all new windshields should have a sticker on them stating place of manufacture), also make sure they use quality urethane like Essex or Sika.
But the most important part is that the windshield is glued in as part of the structural strength of the roof, when they cut out the old windshield they will probably put some small scratches on the pinchweld metal, make very sure they primer over those scratches with a primer of the same brand as the urethane they are using, or 2 years down the road you will have a rust problem.
If you have any questions let me know.
Bill.